Publications

 

  • Chwalenia, K., & Li, H. Chimeric Fusion RNAs in Cancer and Normal Physiology. WIREs RNA (in press) (2017)
  • Qin, F, Liu, Zhang, Y, Liu, J & Li, H. SLC45A3-ELK4 Functions as a Long Non-Coding Chimeric RNA. Cancer Letters (in press)
  • Tang, Y., Qin, F., Liu, A., & Li, H. Recurrent fusion RNA DUS4L-BCAP29 in non-cancer human tissues and cells. Oncotarget. 2017 Mar 17. doi: 10.18632/oncotarget.16329.
  • Jia Y, Xie Z, Li H. Intergenically Spliced Chimeric RNAs in Cancer. Trends in cancer. 2017;2(9): 475-484. PMID: 28210711 | PMCID: PMC5305119
  • Xie Z, Li H. Fusion RNA profiling provides hints on cell of origin of mysterious tumor. Molecular & cellular oncology. 2017;4(1): e1263714. PMID: 28197537 | PMCID: PMC5287003
  • Babiceanu M, Qin F, Xie Z, Jia Y, Lopez K, Janus N, Facemire L, Kumar S, Pang Y, Qi Y, Lazar I, Li H. Recurrent chimeric fusion RNAs in non-cancer tissues and cells. Nucleic acids research. 2016;44(6): 2859-72. PMID: 26837576 | PMCID: PMC4824105
  • Kumar S, Razzaq S, Vo A, Gautam M, Li H. Identifying fusion transcripts using next generation sequencing. Wiley interdisciplinary reviews. RNA. 2016;7(6): 811-823. PMID: 27485475 | PMCID: PMC5065767
  • Kumar S, Vo A, Qin F, Li H. Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data. Scientific reports. 2016;6 21597. PMID: 26862001 | PMCID: PMC4748267
  • Qin F, Song Y, Zhang Y, Facemire L, Frierson H, Li H. Role of CTCF in Regulating SLC45A3-ELK4 Chimeric RNA. PloS one. 2016;11(3): e0150382. PMID: 26938874 | PMCID: PMC4777538
  • Qin F, Song Z, Chang M, Song Y, Frierson H, Li H. Recurrent cis-SAGe chimeric RNA, D2HGDH-GAL3ST2, in prostate cancer. Cancer letters. 2016;380(1): 39-46. PMID: 27322736
  • Xie Z, Babiceanu M, Kumar S, Jia Y, Qin F, Barr F, Li H. Fusion transcriptome profiling provides insights into alveolar rhabdomyosarcoma. Proceedings of the National Academy of Sciences of the United States of America. 2016;113(46): 13126-13131. PMID: 27799565 | PMCID: PMC5135356
  • Pires E, D’Souza R, Needham M, Herr A, Jazaeri A, Li H, Stoler M, Anderson-Knapp K, Thomas T, Mandal A, Gougeon A, Flickinger C, Bruns D, Pollok B, Herr J. Membrane associated cancer-oocyte neoantigen SAS1B/ovastacin is a candidate immunotherapeutic target for uterine tumors. Oncotarget. 2015;6(30): 30194-211. PMID: 26327203 | PMCID: PMC4745790
  • Qin F, Song Z, Babiceanu M, Song Y, Facemire L, Singh R, Adli M, Li H. Discovery of CTCF-sensitive Cis-spliced fusion RNAs between adjacent genes in human prostate cells. PLoS genetics. 2015;11(2): e1005001. PMID: 25658338 | PMCID: PMC4450057
  • Jividen K, Li H. Chimeric RNAs generated by intergenic splicing in normal and cancer cells. Genes, chromosomes & cancer. 2014. PMID: 25131334
  • Yuan H, Qin F, Movassagh M, Park H, Golden W, Xie Z, Zhang P, Sklar J, Li H. A chimeric RNA characteristic of rhabdomyosarcoma in normal myogenesis process. Cancer discovery. 2013;3(12): 1394-403. PMID: 24089019
  • Zhang Y, Gong M, Yuan H, Park H, Frierson H, Li H. Chimeric Transcript Generated by cis-Splicing of Adjacent Genes Regulates Prostate Cancer Cell Proliferation. Cancer discovery. 2012;2(7): 598-607. PMID: 22719019
  • Jazaeri A, Bryant J, Park H, Li H, Dahiya N, Stoler M, Ferriss J, Dutta A. Molecular requirements for transformation of fallopian tube epithelial cells into serous carcinoma. Neoplasia (New York, N.Y.). 2011;13(10): 899-911. PMID: 22028616 | PMCID: PMC3201567
  • Li H, Wang J, Ma X, Sklar J. Gene fusions and RNA trans-splicing in normal and neoplastic human cells. Cell cycle (Georgetown, Tex.). 2009;8(2): 218-22. PMID: 19158498
  • Li H, Wang J, Mor G, Sklar J. A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells. Science (New York, N.Y.). 2008;321(5894): 1357-61. PMID: 18772439
  • Li H, Ma X, Wang J, Koontz J, Nucci M, Sklar J. Effects of rearrangement and allelic exclusion of JJAZ1/SUZ12 on cell proliferation and survival. Proceedings of the National Academy of Sciences of the United States of America. 2007;104(50): 20001-6. PMID: 18077430 | PMCID: PMC2148412
  • Li H, Myeroff L, Smiraglia D, Romero M, Pretlow T, Kasturi L, Lutterbaugh J, Rerko R, Casey G, Issa J, Willis J, Willson J, Plass C, Markowitz S. SLC5A8, a sodium transporter, is a tumor suppressor gene silenced by methylation in human colon aberrant crypt foci and cancers. Proceedings of the National Academy of Sciences of the United States of America. 2003;100(14): 8412-7. PMID: 12829793 | PMCID: PMC166243
  • Li H, Myeroff L, Kasturi L, Krumroy L, Schwartz S, Willson J, Stanbridge E, Casey G, Markowitz S. Chromosomal autonomy of hMLH1 methylation in colon cancer. Oncogene. 2002;21(9): 1443-9. PMID: 11857087

 

 

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